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    LINC00399 long intergenic non-protein coding RNA 399 [ Homo sapiens (human) ]

    Gene ID: 104326054, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00399provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 399provided by HGNC
    Primary source
    HGNC:HGNC:42728
    See related
    AllianceGenome:HGNC:42728
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TCONS_00021596
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00399 in Genome Data Viewer
    Location:
    13q33.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (109400696..109401641)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (108628696..108629641)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (110053043..110053988)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130494219 Neighboring gene long intergenic non-protein coding RNA 370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:109985471-109985971 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:110001130-110002329 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110021749-110022746 Neighboring gene uncharacterized LOC105370359 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:110076314-110076837 Neighboring gene heart enhancer 14 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:110141574-110141689 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:110165798-110166997 Neighboring gene uncharacterized LOC107984602 Neighboring gene uncharacterized LOC124903210 Neighboring gene uncharacterized LOC101927627

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126361.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL160031, BX111569

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      109400696..109401641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      108628696..108629641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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