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    LOC105373480 uncharacterized LOC105373480 [ Homo sapiens (human) ]

    Gene ID: 105373480, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105373480
    Gene description
    uncharacterized LOC105373480
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105373480 in Genome Data Viewer
    Location:
    2p25.3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (739485..779048)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (738708..780130)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373479 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:690095-690594 Neighboring gene uncharacterized LOC105373358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:720518-721018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:725085-725586 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:726648-727445 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:727446-728242 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:729041-729836 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:729837-730634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:766549-767048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:776200-776860 Neighboring gene long intergenic non-protein coding RNA 1115 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:816439-816939 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:826030-826932 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:826933-827834 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:850078-851277 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:863929-865128 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:875979-876480 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15219 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:886383-886882 Neighboring gene long intergenic non-protein coding RNA 1939

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    General gene information

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    Clone Names

    • AC116609.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      739485..779048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007086128.1 RNA Sequence

    2. XR_007086122.1 RNA Sequence

    3. XR_007086101.1 RNA Sequence

    4. XR_007086095.1 RNA Sequence

    5. XR_007086107.1 RNA Sequence

    6. XR_922709.4 RNA Sequence

    7. XR_922710.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      738708..780130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007071740.1 RNA Sequence

    2. XR_007071735.1 RNA Sequence

    3. XR_007071734.1 RNA Sequence

    4. XR_007071737.1 RNA Sequence

    5. XR_007071736.1 RNA Sequence

    6. XR_007071738.1 RNA Sequence

    7. XR_007071739.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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