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    LOC101927480 uncharacterized LOC101927480 [ Homo sapiens (human) ]

    Gene ID: 101927480, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101927480
    Gene description
    uncharacterized LOC101927480
    See related
    Ensembl:ENSG00000245694
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.7) See more
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    Genomic context

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    See LOC101927480 in Genome Data Viewer
    Location:
    16q12.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (54847249..54848233, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (60645352..60646336, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (54881161..54882145, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2183 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:54616376-54617284 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:54618909-54619453 Neighboring gene VISTA enhancer hs37 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:54658831-54659077 Neighboring gene uncharacterized LOC105371274 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54736052-54736552 Neighboring gene NANOG hESC enhancer GRCh37_chr16:54780333-54780857 Neighboring gene uncharacterized LOC105371275 Neighboring gene uncharacterized LOC105371276 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7503 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7504 Neighboring gene colorectal neoplasia differentially expressed

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134971.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC106742, AW573137, BF510120
      Related
      ENST00000561591.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      54847249..54848233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      60645352..60646336 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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