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    PPM1J-DT PPM1J divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105378910, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PPM1J-DTprovided by HGNC
    Official Full Name
    PPM1J divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55355
    See related
    AllianceGenome:HGNC:55355
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.9) See more
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    Genomic context

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    See PPM1J-DT in Genome Data Viewer
    Location:
    1p13.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (112715611..112717796)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (112727942..112730347)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113242906-113243833 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:113246858-113247412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1517 Neighboring gene ras homolog family member C Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1203 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1518 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1J Neighboring gene Sharpr-MPRA regulatory region 11832 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1205 Neighboring gene TAFA chemokine like family member 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:113266466-113266670 Neighboring gene nuclear transport factor 2 pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      112715611..112717796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_947713.4 RNA Sequence

    2. XR_947714.4 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      112727942..112730347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007070540.1 RNA Sequence

    2. XR_007070541.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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