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    Gm19705 predicted gene, 19705 [ Mus musculus (house mouse) ]

    Gene ID: 100503460, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Gm19705provided by MGI
    Official Full Name
    predicted gene, 19705provided by MGI
    Primary source
    MGI:MGI:5011890
    See related
    AllianceGenome:MGI:5011890
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PHAROH
    Summary
    Is expressed in liver. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in placenta adult (RPKM 1.1), liver E14 (RPKM 1.1) and 19 other tissues See more
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    Genomic context

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    See Gm19705 in Genome Data Viewer
    Location:
    1 E4; 1 59.94 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (136611134..136618543)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (136683396..136690805)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr1:138521286-138521587 Neighboring gene zinc finger protein 281 Neighboring gene predicted gene, 34056 Neighboring gene predicted gene, 41958 Neighboring gene STARR-seq mESC enhancer starr_02427 Neighboring gene STARR-seq mESC enhancer starr_02432 Neighboring gene pluripotency associated transcript 22 Neighboring gene predicted gene, 24086 Neighboring gene STARR-positive B cell enhancer ABC_E2012 Neighboring gene macrophage migration inhibitory factor, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. PHAROH lncRNA regulates Myc translation in hepatocellular carcinoma via sequestering TIAR. Yu AT, et al. Elife, 2021 May 18. PMID 34002693, Free PMC Article
    2. Post-entrapment genome engineering: first exon size does not affect the expression of fusion transcripts generated by gene entrapment. Osipovich AB, et al. Genome Res, 2005 Mar. PMID 15741512, Free PMC Article
    3. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    5. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PHAROH lncRNA regulates Myc translation in hepatocellular carcinoma via sequestering TIAR.
      Title: PHAROH lncRNA regulates Myc translation in hepatocellular carcinoma via sequestering TIAR.
    Submit: New GeneRIF Correction

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045324.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      BE447944, BF661059

    2. NR_045325.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon and contains an alternate exon in the 5' region, compared to variant 1.
      Source sequence(s)
      AV450327, BF661059

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      136611134..136618543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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