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    Speer4cos spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript [ Mus musculus (house mouse) ]

    Gene ID: 75858, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Speer4cosprovided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcriptprovided by MGI
    Primary source
    MGI:MGI:1923108
    See related
    Ensembl:ENSMUSG00000089871 AllianceGenome:MGI:1923108
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SPEER-7; Speer7-ps; Speer7-ps1; 4930568L21Rik
    Expression
    Biased expression in testis adult (RPKM 4.5), ovary adult (RPKM 1.2) and 4 other tissues See more
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    Genomic context

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    See Speer4cos in Genome Data Viewer
    Location:
    5 A2; 5 6.51 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (15885708..15919594)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (15680710..15714596)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30417 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4D Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C2 Neighboring gene STARR-seq mESC enhancer starr_12481 Neighboring gene STARR-positive B cell enhancer mm9_chr5:15203829-15204130 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C1 Neighboring gene STARR-seq mESC enhancer starr_12483 Neighboring gene RIKEN cDNA 4930519H02 gene Neighboring gene STARR-seq mESC enhancer starr_12484 Neighboring gene predicted gene, 52852

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • sperm-associated glutamate (E)-rich protein 7, pseudogene
    • spermatogenesis associated glutamate (E)-rich protein 7, pseudogene 1
    • spermatogenic-associated glutamate (E)-rich protein 7, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001585.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117685
      Related
      ENSMUST00000162113.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      15885708..15919594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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