These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_011644.3 → NP_035774.2  Xndr-Trpc2 readthrough

   See identical proteins and their annotated locations for NP_035774.2

   Status: VALIDATED

   Description

   Transcript Variant: This variant (1) represents the longer transcript and encodes an Xndr-Trpc2 protein.

   Source sequence(s)

   AC132297, AC150275

   UniProtKB/Swiss-Prot

   Q9ES59, Q9ES60, Q9R243, Q9R244

   UniProtKB/TrEMBL

   F8VQM8

   Related

   ENSMUSP00000081903.4, ENSMUST00000084843.10

   Conserved Domains (5) summary

   cd00204
   Location:437 → 546

   ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

   TIGR00870
   Location:397 → 1135

   trp; transient-receptor-potential calcium channel protein

   pfam01834
   Location:1 → 149

   XRCC1_N; XRCC1 N terminal domain

   pfam08344
   Location:557 → 616

   TRP_2; Transient receptor ion channel II

   sd00045
   Location:467 → 512

   ANK; ANK repeat [structural motif]

RNA

1. NR_104582.1 RNA Sequence

   Status: VALIDATED

   Description

   Transcript Variant: This variant (2) has multiple differences compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).

   Source sequence(s)

   AC150275, AK040538

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference GRCm39 C57BL/6J

Genomic

1. NC_000073.7 Reference GRCm39 C57BL/6J

   Range

   101714698..101746071

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)