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    ANKRD20A3P ankyrin repeat domain 20 family member A3, pseudogene [ Homo sapiens (human) ]

    Gene ID: 441425, updated on 10-Dec-2024

    Summary

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    Official Symbol
    ANKRD20A3Pprovided by HGNC
    Official Full Name
    ankyrin repeat domain 20 family member A3, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:31981
    See related
    Ensembl:ENSG00000290971 AllianceGenome:HGNC:31981
    Gene type
    pseudo
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ANKRD20A3
    Expression
    Biased expression in testis (RPKM 4.5), lung (RPKM 0.8) and 11 other tissues See more
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    Genomic context

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    See ANKRD20A3P in Genome Data Viewer
    Location:
    9q21.11
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (66093946..66153187, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 95 member B1-like Neighboring gene cytochrome P450 family 4 subfamily F member 59, pseudogene Neighboring gene sorting nexin 18 pseudogene 4 Neighboring gene RNA, U6 small nuclear 538, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:43133708-43134468 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:43134469-43135229 Neighboring gene general transcription factor II, i pseudogene Neighboring gene meprin A subunit alpha pseudogene 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000009.12 Chromosome 9 Reference GRCh38.p14 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. DNA sequence and analysis of human chromosome 9. Humphray SJ, et al. Nature, 2004 May 27. PMID 15164053, Free PMC Article
    2. E3 ubiquitin ligase RNF123 targets lamin B1 and lamin-binding proteins. Khanna R, et al. FEBS J, 2018 Jun. PMID 29676528
    3. Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer. Vichas A, et al. Nat Commun, 2021 Aug 9. PMID 34373451, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • ankyrin repeat domain 20 family, member A3
    • ankyrin repeat domain 20A-related
    • ankyrin repeat domain-containing protein 20A3

    Clone Names

    • MGC176486, MGC198508

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      66093946..66153187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001746296.3 RNA Sequence

    2. XR_001746295.3 RNA Sequence

    3. XR_007061553.1 RNA Sequence

    4. XR_007061554.1 RNA Sequence

      Related
      ENST00000726254.1

    5. XR_007061555.1 RNA Sequence

      Related
      ENST00000697244.2

    6. XR_007061556.1 RNA Sequence

      Related
      ENST00000726260.1

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001012419.2: Suppressed sequence

      Description
      NM_001012419.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VUR7.1 GenPept UniProtKB/Swiss-Prot:Q5VUR7

    Gene LinkOut

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