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    LOC105372645 uncharacterized LOC105372645 [ Homo sapiens (human) ]

    Gene ID: 105372645, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105372645
    Gene description
    uncharacterized LOC105372645
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 18.3) See more
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    Genomic context

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    See LOC105372645 in Genome Data Viewer
    Location:
    20q13.13
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (48471342..48473330)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (50240759..50242794)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 494 Neighboring gene uncharacterized LOC105372643 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47034597-47035373 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47054573-47055079 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47083129-47083690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18018 Neighboring gene uncharacterized LOC107985439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18019 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18020 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18021 Neighboring gene MPRA-validated peak4239 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47118417-47119102 Neighboring gene RNA, U7 small nuclear 144 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      48471342..48473330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_936815.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      50240759..50242794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007089717.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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