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    Ttc9c tetratricopeptide repeat domain 9C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309196, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ttc9cprovided by RGD
    Official Full Name
    tetratricopeptide repeat domain 9Cprovided by RGD
    Primary source
    RGD:1359253
    See related
    EnsemblRapid:ENSRNOG00000019464 AllianceGenome:RGD:1359253
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1359253
    Summary
    Orthologous to human TTC9C (tetratricopeptide repeat domain 9C). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 173.6), Spleen (RPKM 144.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ttc9c in Genome Data Viewer
    Location:
    1q43
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (215130887..215142384, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (205701768..205712782, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (225003859..225014867, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene interferon-induced transmembrane protein 2-like Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene RNA polymerase II subunit G Neighboring gene zinc finger and BTB domain containing 3 Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 2 Neighboring gene BSCL2 lipid droplet biogenesis associated, seipin Neighboring gene G protein subunit gamma 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Na CH, et al. J Proteome Res, 2012 Sep 7. PMID 22871113, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC73022

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 9C
    Names
    TPR domain containing protein RGD1359253
    TPR repeat protein 9C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007693.2 → NP_001007694.1  tetratricopeptide repeat protein 9C

      See identical proteins and their annotated locations for NP_001007694.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/Swiss-Prot
      Q6P5P3
      UniProtKB/TrEMBL
      A0A8I6AP96, A6HZU8
      Related
      ENSRNOP00000096266.2, ENSRNOT00000095692.2
      Conserved Domains (2) summary
      TIGR02917
      Location:82 → 152
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:8 → 36
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      215130887..215142384 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006230988.5 → XP_006231050.1  tetratricopeptide repeat protein 9C isoform X1

      See identical proteins and their annotated locations for XP_006231050.1

      UniProtKB/Swiss-Prot
      Q6P5P3
      UniProtKB/TrEMBL
      A0A8I6AP96, A6HZU8
      Conserved Domains (2) summary
      TIGR02917
      Location:82 → 152
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:8 → 36
      TPR; TPR repeat [structural motif]

    2. XM_006230987.5 → XP_006231049.1  tetratricopeptide repeat protein 9C isoform X1

      See identical proteins and their annotated locations for XP_006231049.1

      UniProtKB/Swiss-Prot
      Q6P5P3
      UniProtKB/TrEMBL
      A0A8I6AP96, A6HZU8
      Conserved Domains (2) summary
      TIGR02917
      Location:82 → 152
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:8 → 36
      TPR; TPR repeat [structural motif]

    3. XM_063264425.1 → XP_063120495.1  tetratricopeptide repeat protein 9C isoform X1

      UniProtKB/Swiss-Prot
      Q6P5P3
      UniProtKB/TrEMBL
      A0A8I6AP96, A6HZU8

    4. XM_063264427.1 → XP_063120497.1  tetratricopeptide repeat protein 9C isoform X1

      UniProtKB/Swiss-Prot
      Q6P5P3
      UniProtKB/TrEMBL
      A0A8I6AP96, A6HZU8

    5. XM_006230985.5 → XP_006231047.1  tetratricopeptide repeat protein 9C isoform X1

      See identical proteins and their annotated locations for XP_006231047.1

      UniProtKB/Swiss-Prot
      Q6P5P3
      UniProtKB/TrEMBL
      A0A8I6AP96, A6HZU8
      Conserved Domains (2) summary
      TIGR02917
      Location:82 → 152
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:8 → 36
      TPR; TPR repeat [structural motif]

    6. XM_063264424.1 → XP_063120494.1  tetratricopeptide repeat protein 9C isoform X1

      UniProtKB/Swiss-Prot
      Q6P5P3
      UniProtKB/TrEMBL
      A0A8I6AP96, A6HZU8
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6P5P3.1 GenPept UniProtKB/Swiss-Prot:Q6P5P3

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