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    Fam234b family with sequence similarity 234, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362455, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Fam234bprovided by RGD
    Official Full Name
    family with sequence similarity 234, member Bprovided by RGD
    Primary source
    RGD:1306151
    See related
    EnsemblRapid:ENSRNOG00000008443 AllianceGenome:RGD:1306151
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306151
    Summary
    Predicted to be located in Golgi apparatus; membrane; and microtubule organizing center. Orthologous to human FAM234B (family with sequence similarity 234 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 129.3), Kidney (RPKM 76.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fam234b in Genome Data Viewer
    Location:
    4q43
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (169779651..169854024)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (168048313..168124017)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (168976797..169052750)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S17, pseudogene 7 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene heme binding protein 1 Neighboring gene germ cell associated 1 Neighboring gene phosphatidylethanolamine binding protein 2 Neighboring gene epithelial membrane protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM234B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108652.1 → NP_001102122.1  protein FAM234B

      See identical proteins and their annotated locations for NP_001102122.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473964
      UniProtKB/Swiss-Prot
      D3ZWJ9
      UniProtKB/TrEMBL
      A0A8I6AHZ5
      Conserved Domains (2) summary
      TIGR03300
      Location:167 → 285
      assembly_YfgL; outer membrane assembly lipoprotein YfgL
      pfam13360
      Location:186 → 473
      PQQ_2; PQQ-like domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      169779651..169854024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107912.2 → XP_038963840.1  protein FAM234B isoform X5

      UniProtKB/TrEMBL
      A0A8I6AHZ5
      Conserved Domains (1) summary
      TIGR03300
      Location:177 → 295
      assembly_YfgL; outer membrane assembly lipoprotein YfgL

    2. XM_039107913.2 → XP_038963841.1  protein FAM234B isoform X6

      UniProtKB/TrEMBL
      A0A8I6AHZ5
      Related
      ENSRNOP00000097300.1, ENSRNOT00000116621.2
      Conserved Domains (1) summary
      TIGR03300
      Location:167 → 285
      assembly_YfgL; outer membrane assembly lipoprotein YfgL

    3. XM_063286372.1 → XP_063142442.1  protein FAM234B isoform X7

      UniProtKB/TrEMBL
      A0A8L2QV23
      Related
      ENSRNOP00000063612.2, ENSRNOT00000068663.3

    4. XM_063286371.1 → XP_063142441.1  protein FAM234B isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZKC6
      Related
      ENSRNOP00000077658.1, ENSRNOT00000114246.2

    5. XM_039107909.2 → XP_038963837.1  protein FAM234B isoform X1

      UniProtKB/TrEMBL
      A0A8I6AHZ5
      Conserved Domains (1) summary
      TIGR03300
      Location:201 → 319
      assembly_YfgL; outer membrane assembly lipoprotein YfgL

    6. XM_039107910.2 → XP_038963838.1  protein FAM234B isoform X2

      UniProtKB/TrEMBL
      A0A8I6AHZ5
      Conserved Domains (1) summary
      TIGR03300
      Location:191 → 309
      assembly_YfgL; outer membrane assembly lipoprotein YfgL

    7. XM_039107911.2 → XP_038963839.1  protein FAM234B isoform X3

      UniProtKB/TrEMBL
      A0A8I6AHZ5
      Conserved Domains (1) summary
      TIGR03300
      Location:201 → 319
      assembly_YfgL; outer membrane assembly lipoprotein YfgL
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D3ZWJ9.1 GenPept UniProtKB/Swiss-Prot:D3ZWJ9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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