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    Zfp956 zinc finger protein 956 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 312301, updated on 9-Dec-2024

    Summary

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    Symbol
    Zfp956provided by RGD
    Full Name
    zinc finger protein 956provided by RGD
    Primary source
    RGD:1304879
    See related
    EnsemblRapid:ENSRNOG00000026874 AllianceGenome:RGD:1304879
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Zfp977; RGD1304879
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 42.9), Thymus (RPKM 41.8) and 9 other tissues See more
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    Genomic context

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    See Zfp956 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (78274206..78298178)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (76943239..76967238)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (77615146..77635367)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 282 Neighboring gene Zinc finger protein 212 Neighboring gene ATP synthase subunit delta, mitochondrial pseudogene Neighboring gene zinc finger protein 783 Neighboring gene transfer RNA cysteine (anticodon GCA) 1 Neighboring gene zinc finger protein 777

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC109278

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 956
    Names
    protein ZNF783
    zinc finger protein 45-like
    zinc finger protein 977

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014056.1 → NP_001014078.1  zinc finger protein 956

      See identical proteins and their annotated locations for NP_001014078.1

      Status: PROVISIONAL

      Source sequence(s)
      BC089951
      UniProtKB/TrEMBL
      Q5FVJ1
      Related
      ENSRNOP00000056030.4, ENSRNOT00000059263.4
      Conserved Domains (3) summary
      COG5048
      Location:259 → 433
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:328 → 348
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:397 → 421
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      78274206..78298178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063286025.1 → XP_063142095.1  zinc finger protein 956 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZPS4, A6K0D7
      Related
      ENSRNOP00000080422.1, ENSRNOT00000105916.2

    2. XM_063286023.1 → XP_063142093.1  zinc finger protein 956 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZPS4, A6K0D7

    3. XM_039107543.2 → XP_038963471.1  zinc finger protein 956 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZPS4, A6K0D7
      Conserved Domains (4) summary
      COG5048
      Location:380 → 445
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:328 → 348
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:326 → 348
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:397 → 421
      zf-H2C2_2; Zinc-finger double domain

    4. XM_063286024.1 → XP_063142094.1  zinc finger protein 956 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZPS4, A6K0D7

    5. XM_063286022.1 → XP_063142092.1  zinc finger protein 956 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZPS4, A6K0D7

    6. XM_063286026.1 → XP_063142096.1  zinc finger protein 956 isoform X2

      UniProtKB/TrEMBL
      Q5FVJ1

    7. XM_039107546.2 → XP_038963474.1  zinc finger protein 956 isoform X3

      Conserved Domains (4) summary
      COG5048
      Location:163 → 228
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:111 → 131
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:109 → 131
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:180 → 204
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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