Pcdh20 protocadherin 20 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Pcdh20provided by RGD
Official Full Name: protocadherin 20provided by RGD
Primary source: RGD:1306297
See related: EnsemblRapid:ENSRNOG00000013306 AllianceGenome:RGD:1306297
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be active in plasma membrane. Orthologous to human PCDH20 (protocadherin 20). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Brain (RPKM 103.1), Adrenal (RPKM 26.6) and 2 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 15q12

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	15	NC_086033.1 (70834042..70840298, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	15	NC_051350.1 (64425534..64431790, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	15	NC_005114.4 (71772777..71779033, complement)

Chromosome 15 - NC_086033.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

BE108656 (e-PCR)
- UniSTS:247832

RH144562 (e-PCR)
- UniSTS:233807

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cell adhesion	IBA Inferred from Biological aspect of Ancestor more info
involved_in homophilic cell adhesion via plasma membrane adhesion molecules	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: protocadherin-20

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001107280.1 → NP_001100750.1 protocadherin-20

See identical proteins and their annotated locations for NP_001100750.1

Status: PROVISIONAL

Source sequence(s)

CH473951

UniProtKB/TrEMBL

A6HU36, D4ADD1

Related

ENSRNOP00000017765.4, ENSRNOT00000017765.6

Conserved Domains (2) summary

cd11304
Location:541 → 636

Cadherin_repeat; Cadherin tandem repeat domain

cl09101
Location:70 → 153

E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus