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    Cep15 centrosomal protein 15 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289928, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Cep15provided by RGD
    Official Full Name
    centrosomal protein 15provided by RGD
    Primary source
    RGD:1306063
    See related
    EnsemblRapid:ENSRNOG00000039871 AllianceGenome:RGD:1306063
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306063
    Summary
    Orthologous to human CEP15 (centrosomal protein 15). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 74.1), Kidney (RPKM 73.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cep15 in Genome Data Viewer
    Location:
    15p15
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (15247627..15265560, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (12815159..12835115, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (12869217..12889144, complement)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene Fez family zinc finger 2 Neighboring gene activated RNA polymerase II transcriptional coactivator p15 pseudogene Neighboring gene protein tyrosine phosphatase, receptor type, G Neighboring gene uncharacterized LOC134482084

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    centrosomal protein 15
    Names
    uncharacterized protein C3orf14 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106026.2 → NP_001099496.1  centrosomal protein 15

      See identical proteins and their annotated locations for NP_001099496.1

      Status: PROVISIONAL

      Source sequence(s)
      BC168755
      UniProtKB/TrEMBL
      B5DEQ1
      Conserved Domains (1) summary
      pfam15134
      Location:1 → 109
      DUF4570; Domain of unknown function (DUF4570)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      15247627..15265560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039093088.2 → XP_038949016.1  centrosomal protein 15 isoform X3

      UniProtKB/TrEMBL
      A0A0G2JUN2, A6K091
      Conserved Domains (1) summary
      pfam15134
      Location:1 → 105
      DUF4570; Domain of unknown function (DUF4570)

    2. XM_006251736.5 → XP_006251798.1  centrosomal protein 15 isoform X3

      See identical proteins and their annotated locations for XP_006251798.1

      UniProtKB/TrEMBL
      A0A0G2JUN2, A6K091
      Conserved Domains (1) summary
      pfam15134
      Location:1 → 105
      DUF4570; Domain of unknown function (DUF4570)

    3. XM_039093086.2 → XP_038949014.1  centrosomal protein 15 isoform X2

      UniProtKB/TrEMBL
      B5DEQ1
      Conserved Domains (1) summary
      pfam15134
      Location:1 → 109
      DUF4570; Domain of unknown function (DUF4570)

    4. XM_006251731.5 → XP_006251793.1  centrosomal protein 15 isoform X1

      See identical proteins and their annotated locations for XP_006251793.1

      Conserved Domains (1) summary
      pfam15134
      Location:1 → 105
      DUF4570; Domain of unknown function (DUF4570)

    5. XM_006251730.5 → XP_006251792.1  centrosomal protein 15 isoform X1

      See identical proteins and their annotated locations for XP_006251792.1

      Related
      ENSRNOP00000069161.2, ENSRNOT00000084687.3
      Conserved Domains (1) summary
      pfam15134
      Location:1 → 105
      DUF4570; Domain of unknown function (DUF4570)

    6. XM_063274073.1 → XP_063130143.1  centrosomal protein 15 isoform X2

      UniProtKB/TrEMBL
      B5DEQ1

    7. XM_006251733.4 → XP_006251795.1  centrosomal protein 15 isoform X1

      See identical proteins and their annotated locations for XP_006251795.1

      Conserved Domains (1) summary
      pfam15134
      Location:1 → 105
      DUF4570; Domain of unknown function (DUF4570)

    8. XM_063274075.1 → XP_063130145.1  centrosomal protein 15 isoform X3

      UniProtKB/TrEMBL
      A0A0G2JUN2, A6K091

    9. XM_063274076.1 → XP_063130146.1  centrosomal protein 15 isoform X3

      UniProtKB/TrEMBL
      A0A0G2JUN2, A6K091

    10. XM_006251732.4 → XP_006251794.1  centrosomal protein 15 isoform X1

      See identical proteins and their annotated locations for XP_006251794.1

      Conserved Domains (1) summary
      pfam15134
      Location:1 → 105
      DUF4570; Domain of unknown function (DUF4570)

    11. XM_063274078.1 → XP_063130148.1  centrosomal protein 15 isoform X3

      UniProtKB/TrEMBL
      A0A0G2JUN2, A6K091

    12. XM_063274071.1 → XP_063130141.1  centrosomal protein 15 isoform X1

    13. XM_063274074.1 → XP_063130144.1  centrosomal protein 15 isoform X2

      UniProtKB/TrEMBL
      B5DEQ1

    14. XM_063274077.1 → XP_063130147.1  centrosomal protein 15 isoform X3

      UniProtKB/TrEMBL
      A0A0G2JUN2, A6K091

    15. XM_017599609.3 → XP_017455098.1  centrosomal protein 15 isoform X1

      Conserved Domains (1) summary
      pfam15134
      Location:1 → 105
      DUF4570; Domain of unknown function (DUF4570)

    16. XM_063274080.1 → XP_063130150.1  centrosomal protein 15 isoform X5

    17. XM_063274079.1 → XP_063130149.1  centrosomal protein 15 isoform X4

    18. XM_063274081.1 → XP_063130151.1  centrosomal protein 15 isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

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