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    Tmem41a transmembrane protein 41a [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681708, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tmem41aprovided by RGD
    Official Full Name
    transmembrane protein 41aprovided by RGD
    Primary source
    RGD:1591692
    See related
    EnsemblRapid:ENSRNOG00000046283 AllianceGenome:RGD:1591692
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM41A (transmembrane protein 41A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 89.7), Brain (RPKM 75.3) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Tmem41a in Genome Data Viewer
    Location:
    11q23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (92588497..92595105)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (79084005..79090613)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (82734525..82741177)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene SUMO specific peptidase 2 Neighboring gene lipase H Neighboring gene mitogen-activated protein kinase kinase kinase 13 Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100805.1NP_001094275.1  transmembrane protein 41A

      See identical proteins and their annotated locations for NP_001094275.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161997
      UniProtKB/TrEMBL
      A0A8I5Y0U1, A0A9K3Y6N6, B1WC43, M0R9Y7
      Related
      ENSRNOP00000066322.3, ENSRNOT00000074826.4
      Conserved Domains (1) summary
      pfam09335
      Location:85205
      SNARE_assoc; SNARE associated Golgi protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      92588497..92595105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)