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    Cnksr1 connector enhancer of kinase suppressor of Ras 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298545, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cnksr1provided by RGD
    Official Full Name
    connector enhancer of kinase suppressor of Ras 1provided by RGD
    Primary source
    RGD:1311879
    See related
    EnsemblRapid:ENSRNOG00000022838 AllianceGenome:RGD:1311879
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in synapse organization. Predicted to be located in cell cortex. Orthologous to human CNKSR1 (connector enhancer of kinase suppressor of Ras 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 58.6), Kidney (RPKM 39.3) and 5 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Cnksr1 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (151731222..151742049, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (146447495..146458332, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (152447348..152458005, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene Uromoduilin-like Neighboring gene cation channel, sperm associated 4 Neighboring gene uncharacterized LOC120103003 Neighboring gene zinc finger protein 593 Neighboring gene similar to human chromosome 1 open reading frame 230

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Clone Names

    • MGC124829

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables protein-macromolecule adaptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in synapse organization IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cell cortex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    connector enhancer of kinase suppressor of ras 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039011.1NP_001034100.1  connector enhancer of kinase suppressor of ras 1

      See identical proteins and their annotated locations for NP_001034100.1

      Status: PROVISIONAL

      Source sequence(s)
      BC099788
      UniProtKB/TrEMBL
      A6IT10, Q499S0
      Conserved Domains (6) summary
      smart00454
      Location:469
      SAM; Sterile alpha motif
      cd00992
      Location:205273
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01260
      Location:381494
      PH_CNK_mammalian-like; Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain
      pfam00169
      Location:395491
      PH; PH domain
      pfam10534
      Location:78161
      CRIC_ras_sig; Connector enhancer of kinase suppressor of ras
      cl15755
      Location:470
      SAM_superfamily; SAM (Sterile alpha motif )

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      151731222..151742049 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063287451.1XP_063143521.1  connector enhancer of kinase suppressor of ras 1 isoform X3

      Related
      ENSRNOP00000029346.4, ENSRNOT00000031225.6
    2. XM_039109635.1XP_038965563.1  connector enhancer of kinase suppressor of ras 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AI85
      Related
      ENSRNOP00000095433.2, ENSRNOT00000097555.2
      Conserved Domains (4) summary
      cd00992
      Location:300364
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01260
      Location:472585
      PH_CNK_mammalian-like; Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain
      pfam10534
      Location:142225
      CRIC_ras_sig; Connector enhancer of kinase suppressor of ras
      cl15755
      Location:68134
      SAM_superfamily; SAM (Sterile alpha motif )
    3. XM_063287450.1XP_063143520.1  connector enhancer of kinase suppressor of ras 1 isoform X1

    4. XM_063287452.1XP_063143522.1  connector enhancer of kinase suppressor of ras 1 isoform X4

    5. XM_063287453.1XP_063143523.1  connector enhancer of kinase suppressor of ras 1 isoform X5

      UniProtKB/TrEMBL
      A0A8I6AN25