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    Fam209 family with sequence similarity 209 [ Mus musculus (house mouse) ]

    Gene ID: 76426, updated on 27-Nov-2024

    Summary

    Official Symbol
    Fam209provided by MGI
    Official Full Name
    family with sequence similarity 209provided by MGI
    Primary source
    MGI:MGI:1923676
    See related
    Ensembl:ENSMUSG00000027505 AllianceGenome:MGI:1923676
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700029J11Rik
    Summary
    Involved in acrosome assembly. Located in nuclear inner membrane. Is expressed in testis. Orthologous to human FAM209A (family with sequence similarity 209 member A) and FAM209B (family with sequence similarity 209 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 140.4) See more
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    Genomic context

    See Fam209 in Genome Data Viewer
    Location:
    2 H3; 2 94.87 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (172314474..172316236)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (172472554..172474316)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene Cas scaffolding protein family member 4 Neighboring gene uncharacterized LOC118568483 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:172259262-172259485 Neighboring gene STARR-positive B cell enhancer ABC_E3425 Neighboring gene replication termination factor 2 Neighboring gene glucosaminyl (N-acetyl) transferase family member 7 Neighboring gene STARR-seq mESC enhancer starr_06574 Neighboring gene STARR-seq mESC enhancer starr_06576 Neighboring gene predicted gene, 40009 Neighboring gene STARR-seq mESC enhancer starr_06577 Neighboring gene ribosomal protein S29 pseudogene Neighboring gene predicted gene, 35864

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4)  1 citation
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in acrosome assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in spermatid development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nuclear inner membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    protein FAM209
    Names
    likely orthologue of H. sapiens chromosome 20 open reading frame 106 (C20orf106)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029608.1NP_083884.1  protein FAM209 precursor

      See identical proteins and their annotated locations for NP_083884.1

      Status: PREDICTED

      Source sequence(s)
      BC137933
      Consensus CDS
      CCDS50809.1
      UniProtKB/Swiss-Prot
      A2APA5, Q9D9T2
      Related
      ENSMUSP00000029007.3, ENSMUST00000029007.3
      Conserved Domains (1) summary
      pfam15206
      Location:21167
      FAM209; FAM209 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      172314474..172316236
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)