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    4930562F07Rik RIKEN cDNA 4930562F07 gene [ Mus musculus (house mouse) ]

    Gene ID: 75255, updated on 22-Oct-2024

    Summary

    Official Symbol
    4930562F07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930562F07 geneprovided by MGI
    Primary source
    MGI:MGI:1922505
    See related
    Ensembl:ENSMUSG00000026729 AllianceGenome:MGI:1922505
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in bladder adult (RPKM 31.1), spleen adult (RPKM 16.3) and 22 other tissues See more
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    Genomic context

    See 4930562F07Rik in Genome Data Viewer
    Location:
    1 H2.1; 1 69.38 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (159902305..159905555, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (160074735..160077985, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31493 Neighboring gene predicted gene, 31667 Neighboring gene RIKEN cDNA 4930523C07 gene Neighboring gene STARR-positive B cell enhancer ABC_E11694 Neighboring gene STARR-positive B cell enhancer ABC_E8778 Neighboring gene STARR-positive B cell enhancer ABC_E9489 Neighboring gene predicted gene, 37294 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:162009351-162009552 Neighboring gene tenascin N Neighboring gene predicted gene, 53640 Neighboring gene STARR-seq mESC enhancer starr_02794 Neighboring gene mitochondrial ribosomal protein S14

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038030.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript.
      Source sequence(s)
      AK016191, BU938572
      Related
      ENSMUST00000028061.10
    2. NR_038031.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate 5' exon, compared to variant 1.
      Source sequence(s)
      AK016191, BU938572
      Related
      ENSMUST00000164249.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      159902305..159905555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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