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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001113188.3 → NP_001106659.1 RNA-binding protein FXR1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1, also known as isoform e).
- Source sequence(s)
-
AC068294, AC115078
- Consensus CDS
-
CCDS50891.1
- UniProtKB/Swiss-Prot
- Q61584, Q8VCU4, Q9R1E2, Q9R1E3, Q9R1E4, Q9R1E5, Q9WUA7, Q9WUA8, Q9WUA9
- Related
- ENSMUSP00000001620.9, ENSMUST00000001620.13
- Conserved Domains (6) summary
-
- smart00322
Location:221 → 280
- KH; K homology RNA-binding domain
- cd00105
Location:286 → 352
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam05641
Location:62 → 118
- Agenet; Agenet domain
- pfam12235
Location:354 → 465
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:491 → 563
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- pfam16097
Location:610 → 676
- FXR_C3; Fragile X-related 1 protein C-terminal region 3
-
NM_001113189.3 → NP_001106660.1 RNA-binding protein FXR1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks alternate in-frame segments in both the mid-coding and 3' coding regions, compared to variant 1, resulting in a shorter protein (isoform 2, also known as isoform d), compared to isoform 1.
- Source sequence(s)
-
AC068294, AC115078
- Consensus CDS
-
CCDS79896.1
- UniProtKB/Swiss-Prot
-
Q61584
- Related
- ENSMUSP00000142441.2, ENSMUST00000197694.5
- Conserved Domains (6) summary
-
- smart00322
Location:221 → 280
- KH; K homology RNA-binding domain
- cd00105
Location:286 → 352
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam05641
Location:62 → 118
- Agenet; Agenet domain
- pfam12235
Location:354 → 436
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:462 → 535
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- pfam16097
Location:554 → 620
- FXR_C3; Fragile X-related 1 protein C-terminal region 3
-
NM_001428474.1 → NP_001415403.1 RNA-binding protein FXR1 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate exon in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 4, also known as isoform c), compared to isoform 1.
- Source sequence(s)
-
AC068294, AC115078
-
NM_001428475.1 → NP_001415404.1 RNA-binding protein FXR1 isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks an alternate in-frame segment in the 3' coding regions, compared to variant 1, resulting in a shorter protein (isoform 5, also known as isoform f), compared to isoform 1.
- Source sequence(s)
-
AC068294, AC115078
-
NM_001428476.1 → NP_001415405.1 RNA-binding protein FXR1 isoform 6
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks two alternate exons in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 6, also known as isoform b), compared to isoform 1.
- Source sequence(s)
-
AC068294, AC115078
- UniProtKB/TrEMBL
-
A0A0G2JEP0
-
NM_008053.4 → NP_032079.1 RNA-binding protein FXR1 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 3' UTR, and lacks an alternate in-frame segment in the mid-coding region and two alternate exons in the 3' coding region, compared to variant 1. The resulting protein (isoform 3, also known as isoform a) contains a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC068294, AC115078
- Consensus CDS
-
CCDS50890.1
- UniProtKB/TrEMBL
-
A0A0H2UH27
- Related
- ENSMUSP00000143392.2, ENSMUST00000200392.5
- Conserved Domains (5) summary
-
- smart00322
Location:221 → 280
- KH; K homology RNA-binding domain
- cd00105
Location:286 → 352
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam05641
Location:62 → 118
- Agenet; Agenet domain
- pfam12235
Location:354 → 436
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:462 → 535
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000069.7 Reference GRCm39 C57BL/6J
- Range
-
34074133..34124129
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006535400.2 → XP_006535463.1 RNA-binding protein FXR1 isoform X1
- UniProtKB/Swiss-Prot
-
Q61584
- Conserved Domains (8) summary
-
- smart00322
Location:221 → 280
- KH; K homology RNA-binding domain
- cd00105
Location:286 → 352
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam05641
Location:62 → 117
- Agenet; Agenet domain
- pfam12235
Location:354 → 465
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:491 → 564
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- pfam16097
Location:583 → 649
- FXR_C3; Fragile X-related 1 protein C-terminal region 3
- pfam17904
Location:123 → 207
- KH_9; FMRP KH0 domain
- pfam18336
Location:4 → 52
- Tudor_FRX1; Fragile X mental retardation Tudor domain
-
XM_006535402.2 → XP_006535465.1 RNA-binding protein FXR1 isoform X4
- Related
- ENSMUSP00000142847.2, ENSMUST00000198051.5
- Conserved Domains (7) summary
-
- smart00322
Location:221 → 280
- KH; K homology RNA-binding domain
- cd00105
Location:286 → 352
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam05641
Location:62 → 117
- Agenet; Agenet domain
- pfam12235
Location:354 → 465
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:491 → 564
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- pfam17904
Location:123 → 207
- KH_9; FMRP KH0 domain
- pfam18336
Location:4 → 52
- Tudor_FRX1; Fragile X mental retardation Tudor domain
-
XM_006535401.2 → XP_006535464.1 RNA-binding protein FXR1 isoform X2
- UniProtKB/Swiss-Prot
-
Q61584
- Conserved Domains (8) summary
-
- smart00322
Location:221 → 280
- KH; K homology RNA-binding domain
- cd00105
Location:286 → 352
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam05641
Location:62 → 117
- Agenet; Agenet domain
- pfam12235
Location:354 → 436
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:462 → 534
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- pfam16097
Location:581 → 647
- FXR_C3; Fragile X-related 1 protein C-terminal region 3
- pfam17904
Location:123 → 207
- KH_9; FMRP KH0 domain
- pfam18336
Location:4 → 52
- Tudor_FRX1; Fragile X mental retardation Tudor domain
-
XM_036162897.1 → XP_036018790.1 RNA-binding protein FXR1 isoform X6
- UniProtKB/TrEMBL
-
A0A0H2UH27
- Conserved Domains (6) summary
-
- pfam12235
Location:269 → 380
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:406 → 479
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- cd22504
Location:38 → 114
- KH_I_FXR1_rpt1; first type I K homology (KH) RNA-binding domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
- cd22507
Location:133 → 195
- KH_I_FXR1_rpt2; second type I K homology (KH) RNA-binding domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
- cd22510
Location:196 → 273
- KH_I_FXR1_rpt3; third type I K homology (KH) RNA-binding domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
- cl02573
Location:1 → 41
- Tudor_SF; Tudor domain superfamily
-
XM_036162895.1 → XP_036018788.1 RNA-binding protein FXR1 isoform X3
- Conserved Domains (7) summary
-
- pfam12235
Location:269 → 380
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:406 → 479
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- pfam16097
Location:525 → 591
- FXR_C3; Fragile X-related 1 protein C-terminal region 3
- cd22504
Location:38 → 114
- KH_I_FXR1_rpt1; first type I K homology (KH) RNA-binding domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
- cd22507
Location:133 → 195
- KH_I_FXR1_rpt2; second type I K homology (KH) RNA-binding domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
- cd22510
Location:196 → 273
- KH_I_FXR1_rpt3; third type I K homology (KH) RNA-binding domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
- cl02573
Location:1 → 41
- Tudor_SF; Tudor domain superfamily
-
XM_036162896.1 → XP_036018789.1 RNA-binding protein FXR1 isoform X5
- Conserved Domains (7) summary
-
- pfam12235
Location:269 → 380
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:406 → 479
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- pfam16097
Location:498 → 564
- FXR_C3; Fragile X-related 1 protein C-terminal region 3
- cd22504
Location:38 → 114
- KH_I_FXR1_rpt1; first type I K homology (KH) RNA-binding domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
- cd22507
Location:133 → 195
- KH_I_FXR1_rpt2; second type I K homology (KH) RNA-binding domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
- cd22510
Location:196 → 273
- KH_I_FXR1_rpt3; third type I K homology (KH) RNA-binding domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
- cl02573
Location:1 → 41
- Tudor_SF; Tudor domain superfamily