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    Krbox5 KRAB box domain containing 5 [ Mus musculus (house mouse) ]

    Gene ID: 102637366, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Krbox5provided by MGI
    Official Full Name
    KRAB box domain containing 5provided by MGI
    Primary source
    MGI:MGI:3645096
    See related
    Ensembl:ENSMUSG00000058246 AllianceGenome:MGI:3645096
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm10037; EG328280; Rslcan24
    Summary
    Orthologous to several human genes including ZNF738 (zinc finger protein 738). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in testis adult (RPKM 1.3), frontal lobe adult (RPKM 1.1) and 18 other tissues See more
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    Genomic context

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    See Krbox5 in Genome Data Viewer
    Location:
    13 B3; 13 34.82 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (67979120..67992998)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (67830938..67844879)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930525G20 gene Neighboring gene ribosomal protein, large, P0 pseudogene Neighboring gene zinc finger protein 273 Neighboring gene STARR-seq mESC enhancer starr_34914 Neighboring gene cDNA sequence BC048507 Neighboring gene STARR-seq mESC enhancer starr_34916 Neighboring gene predicted gene 7969

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Expansion and diversification of KRAB zinc-finger genes within a cluster including Regulator of sex-limitation 1 and 2. Krebs CJ, et al. Genomics, 2005 Jun. PMID 15885501
    2. Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorphic liver gene expression. Krebs CJ, et al. Genes Dev, 2003 Nov 1. PMID 14563677, Free PMC Article
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC102637366
    Names
    regulator of sex-limitation candidate 24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001309373.1 → NP_001296302.1  uncharacterized protein LOC102637366

      See identical proteins and their annotated locations for NP_001296302.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      CT030655
      Consensus CDS
      CCDS88477.1
      UniProtKB/TrEMBL
      A0A1Y7VMN9
      Related
      ENSMUSP00000152317.2, ENSMUST00000221620.2
      Conserved Domains (1) summary
      smart00349
      Location:2 → 58
      KRAB; krueppel associated box

    2. NM_001309374.1 → NP_001296303.1  uncharacterized protein LOC102637366

      See identical proteins and their annotated locations for NP_001296303.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      CT030194, CT030655
      Consensus CDS
      CCDS88477.1
      UniProtKB/TrEMBL
      A0A1Y7VMN9
      Related
      ENSMUSP00000152830.2, ENSMUST00000221266.2
      Conserved Domains (1) summary
      smart00349
      Location:2 → 58
      KRAB; krueppel associated box

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      67979120..67992998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315332.3 → XP_017170821.1  uncharacterized protein LOC102637366 isoform X1

      UniProtKB/TrEMBL
      A0A1Y7VMN9
      Conserved Domains (1) summary
      smart00349
      Location:2 → 58
      KRAB; krueppel associated box

    2. XM_017315334.1 → XP_017170823.1  uncharacterized protein LOC102637366 isoform X1

      UniProtKB/TrEMBL
      A0A1Y7VMN9
      Conserved Domains (1) summary
      smart00349
      Location:2 → 58
      KRAB; krueppel associated box

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001015506.1: Suppressed sequence

      Description
      NM_001015506.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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