Phyhip phytanoyl-CoA hydroxylase interacting protein [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Phyhipprovided by MGI
Official Full Name: phytanoyl-CoA hydroxylase interacting proteinprovided by MGI
Primary source: MGI:MGI:1860417
See related: Ensembl:ENSMUSG00000003469 AllianceGenome:MGI:1860417
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Lnap1ip; PAHX-AP1; PAHX-AP#1; C630010D02Rik
Summary: Predicted to enable protein tyrosine kinase binding activity. Predicted to be involved in protein localization. Predicted to be active in cytoplasm. Is expressed in several structures, including central nervous system; hemolymphoid system gland; musculoskeletal system; nose; and skin. Orthologous to human PHYHIP (phytanoyl-CoA 2-hydroxylase interacting protein). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in cerebellum adult (RPKM 89.9), cortex adult (RPKM 83.2) and 4 other tissues See more
Orthologs: human all
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Genomic context

Location:: 14 D2; 14 36.32 cM

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	14	NC_000080.7 (70694957..70706266)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	14	NC_000080.6 (70457517..70468826)

Chromosome 14 - NC_000080.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)
Targeted (1)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein tyrosine kinase binding	IEA Inferred from Electronic Annotation more info
enables protein tyrosine kinase binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in protein localization	ISO Inferred from Sequence Orthology more info
involved_in protein localization	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: phytanoyl-CoA hydroxylase-interacting protein

Names: PAHXAP1; lupus nephritis-associated peptide 1 interacting protein; phytanoyl-CoA hydroxylase-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_145981.3 → NP_666093.1 phytanoyl-CoA hydroxylase-interacting protein

See identical proteins and their annotated locations for NP_666093.1

Status: PROVISIONAL

Source sequence(s)

AK049900

Consensus CDS

CCDS36971.1

UniProtKB/Swiss-Prot

Q8K0S0

UniProtKB/TrEMBL

B9EIC7

Related

ENSMUSP00000003561.4, ENSMUST00000003561.10

Conserved Domains (1) summary

cd00063
Location:5 → 112

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000080.7 Reference GRCm39 C57BL/6J

Range

70694957..70706266

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006518379.5 → XP_006518442.1 phytanoyl-CoA hydroxylase-interacting protein isoform X1

See identical proteins and their annotated locations for XP_006518442.1

UniProtKB/Swiss-Prot

Q8K0S0

UniProtKB/TrEMBL

B9EIC7

Conserved Domains (1) summary

cd00063
Location:5 → 112

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
XM_006518380.4 → XP_006518443.1 phytanoyl-CoA hydroxylase-interacting protein isoform X1

See identical proteins and their annotated locations for XP_006518443.1

UniProtKB/Swiss-Prot

Q8K0S0

UniProtKB/TrEMBL

B9EIC7

Conserved Domains (1) summary

cd00063
Location:5 → 112

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...