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    Gm9222 predicted gene 9222 [ Mus musculus (house mouse) ]

    Gene ID: 668525, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm9222provided by MGI
    Official Full Name
    predicted gene 9222provided by MGI
    Primary source
    MGI:MGI:3647701
    See related
    Ensembl:ENSMUSG00000121309 AllianceGenome:MGI:3647701
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BDR-1; Gm29722; EG668383; EG668525
    Summary
    Is expressed in brain and telencephalon. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 3.4), ovary adult (RPKM 3.2) and 27 other tissues See more
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    Genomic context

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    See Gm9222 in Genome Data Viewer
    Location:
    12 A1.2; 12 8.14 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (17931553..18236175)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (17881552..17939655)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene hippocalcin-like 1 Neighboring gene STARR-seq mESC enhancer starr_31667 Neighboring gene predicted gene, 51995 Neighboring gene STARR-seq mESC enhancer starr_31670 Neighboring gene predicted gene, 40312 Neighboring gene STARR-seq mESC enhancer starr_31671 Neighboring gene predicted gene, 51520 Neighboring gene STARR-seq mESC enhancer starr_31672 Neighboring gene predicted gene 4983 Neighboring gene predicted gene, 49328 Neighboring gene STARR-seq mESC enhancer starr_31673 Neighboring gene predicted gene, 40850 Neighboring gene STARR-seq mESC enhancer starr_31675 Neighboring gene hippocalcin-like protein 1 Neighboring gene hippocalcin-like protein 1 Neighboring gene BCL2/adenovirus E1B interacting protein 3-like, pseudogene Neighboring gene predicted gene, 40879

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A genetic analysis of neural progenitor differentiation. Geschwind DH, et al. Neuron, 2001 Feb. PMID 11239426
    2. Neural progenitor genes. Germinal zone expression and analysis of genetic overlap in stem cell populations. Easterday MC, et al. Dev Biol, 2003 Dec 15. PMID 14651920
    3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC668525

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001382838.1 → NP_001369767.1  uncharacterized protein LOC668525 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC154636
      Related
      ENSMUST00000310214.1
      Conserved Domains (4) summary
      COG5048
      Location:98 → 408
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:370 → 390
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:45 → 85
      KRAB; KRAB box
      pfam13465
      Location:414 → 435
      zf-H2C2_2; Zinc-finger double domain

    2. NM_001382839.1 → NP_001369768.1  uncharacterized protein LOC668525 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC154636, CT030170
      Conserved Domains (1) summary
      pfam01352
      Location:45 → 85
      KRAB; KRAB box

    3. NM_001382840.1 → NP_001369769.1  uncharacterized protein LOC668525 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC154636
      Conserved Domains (1) summary
      pfam01352
      Location:45 → 85
      KRAB; KRAB box

    4. NM_001382841.1 → NP_001369770.1  uncharacterized protein LOC668525 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC154636, CT030170

    5. NM_001382842.1 → NP_001369771.1  uncharacterized protein LOC668525 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC154636
      Related
      ENSMUST00000310215.1

    6. NM_001382843.1 → NP_001369772.1  uncharacterized protein LOC668525 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC154636, CT030170

    RNA

    1. NR_168599.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154636

    2. NR_168600.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154636, CT030170

    3. NR_168601.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154636, CT030170
      Related
      ENSMUST00000310202.1

    4. NR_168602.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154636, CT030170
      Related
      ENSMUST00000310200.1

    5. NR_168603.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154636, CT030170
      Related
      ENSMUST00000310201.1

    6. NR_168604.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154636, CT030170

    7. NR_168605.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154636, CT030170
      Related
      ENSMUST00000310203.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      17931553..18236175
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157582.1 → XP_036013475.1  uncharacterized protein LOC668525 isoform X1

      Conserved Domains (1) summary
      pfam01352
      Location:45 → 85
      KRAB; KRAB box

    2. XM_036157583.1 → XP_036013476.1  uncharacterized protein LOC668525 isoform X2

    3. XM_036157584.1 → XP_036013477.1  uncharacterized protein LOC668525 isoform X3

    4. XM_036157586.1 → XP_036013479.1  uncharacterized protein LOC668525 isoform X5

    5. XM_036157585.1 → XP_036013478.1  uncharacterized protein LOC668525 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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