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    1700025G04Rik RIKEN cDNA 1700025G04 gene [ Mus musculus (house mouse) ]

    Gene ID: 69399, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1700025G04Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700025G04 geneprovided by MGI
    Primary source
    MGI:MGI:1916649
    See related
    Ensembl:ENSMUSG00000032666 AllianceGenome:MGI:1916649
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610510E02Rik; 2900042O04Rik
    Summary
    Is expressed in several structures, including adrenal gland; central nervous system; gut; sensory organ; and sternum. Orthologous to human C1orf21 (chromosome 1 open reading frame 21). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in placenta adult (RPKM 7.1), cerebellum adult (RPKM 6.4) and 25 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 1700025G04Rik in Genome Data Viewer
    Location:
    1 G2; 1 64.43 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (151760275..151967941, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (151884524..152091121, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2565 Neighboring gene STARR-positive B cell enhancer ABC_E7757 Neighboring gene STARR-positive B cell enhancer ABC_E5818 Neighboring gene ER degradation enhancer, mannosidase alpha-like 3 Neighboring gene STARR-positive B cell enhancer mm9_chr1:153670267-153670567 Neighboring gene STARR-seq mESC enhancer starr_02632 Neighboring gene predicted gene, 53604 Neighboring gene U4 spliceosomal RNA Neighboring gene STARR-seq mESC enhancer starr_02636 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene predicted gene, 53608 Neighboring gene predicted gene, 36920

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations. Munton RP, et al. Mol Cell Proteomics, 2007 Feb. PMID 17114649
    2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    3. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    4. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
    5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC14005

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C1orf21 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_197990.3 → NP_932107.1  uncharacterized protein C1orf21 homolog

      See identical proteins and their annotated locations for NP_932107.1

      Status: VALIDATED

      Source sequence(s)
      AC166332, AI552192, AK148738, BB840268, CJ177750, CJ253786
      Consensus CDS
      CCDS35737.1
      UniProtKB/Swiss-Prot
      Q8K207
      UniProtKB/TrEMBL
      Q3TJL3
      Related
      ENSMUSP00000036406.8, ENSMUST00000044581.14
      Conserved Domains (1) summary
      pfam15389
      Location:2 → 118
      DUF4612; Domain of unknown function (DUF4612)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      151760275..151967941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242805.2 → XP_030098665.1  uncharacterized protein C1orf21 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q8K207
      UniProtKB/TrEMBL
      Q3TJL3
      Conserved Domains (1) summary
      pfam15389
      Location:2 → 118
      DUF4612; Domain of unknown function (DUF4612)

    2. XM_011248069.4 → XP_011246371.1  uncharacterized protein C1orf21 homolog isoform X1

      See identical proteins and their annotated locations for XP_011246371.1

      UniProtKB/Swiss-Prot
      Q8K207
      UniProtKB/TrEMBL
      Q3TJL3
      Conserved Domains (1) summary
      pfam15389
      Location:2 → 118
      DUF4612; Domain of unknown function (DUF4612)

    3. XM_036153473.1 → XP_036009366.1  uncharacterized protein C1orf21 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q8K207
      UniProtKB/TrEMBL
      Q3TJL3
      Conserved Domains (1) summary
      pfam15389
      Location:2 → 118
      DUF4612; Domain of unknown function (DUF4612)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8K207.1 GenPept UniProtKB/Swiss-Prot:Q8K207

    Gene LinkOut

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