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    CTAGE9 CTAGE family member 9 [ Homo sapiens (human) ]

    Gene ID: 643854, updated on 10-Dec-2024

    Summary

    Official Symbol
    CTAGE9provided by HGNC
    Official Full Name
    CTAGE family member 9provided by HGNC
    Primary source
    HGNC:HGNC:37275
    See related
    Ensembl:ENSG00000236761 AllianceGenome:HGNC:37275
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein secretion; and vesicle cargo loading. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum exit site and endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See CTAGE9 in Genome Data Viewer
    Location:
    6q23.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (131708441..131711017, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (132902914..132905490, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (132029581..132032157, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RNA, U4 small nuclear 18, pseudogene Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25068 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:132021641-132022226 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:132022227-132022812 Neighboring gene olfactory receptor family 2 subfamily A member 4 Neighboring gene ribosomal protein L15 pseudogene 9 Neighboring gene microRNA 548h-5

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in vesicle cargo loading IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum exit site IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    cTAGE family member 9
    Names
    cutaneous T-cell lymphoma-associated antigen 9
    protein cTAGE-9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145659.1NP_001139131.1  cTAGE family member 9

      See identical proteins and their annotated locations for NP_001139131.1

      Status: VALIDATED

      Source sequence(s)
      AC005587
      Consensus CDS
      CCDS47475.1
      UniProtKB/Swiss-Prot
      A4FU28
      UniProtKB/TrEMBL
      A0A2R8YE69
      Related
      ENSP00000395587.2, ENST00000314099.10
      Conserved Domains (4) summary
      pfam04156
      Location:43188
      IncA; IncA protein
      pfam07926
      Location:123244
      TPR_MLP1_2; TPR/MLP1/MLP2-like protein
      pfam10211
      Location:157229
      Ax_dynein_light; Axonemal dynein light chain
      pfam15233
      Location:338445
      SYCE1; Synaptonemal complex central element protein 1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      131708441..131711017 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      132902914..132905490 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)