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    Ccdc81 coiled-coil domain containing 81 [ Mus musculus (house mouse) ]

    Gene ID: 70884, updated on 27-Nov-2024

    Summary

    Official Symbol
    Ccdc81provided by MGI
    Official Full Name
    coiled-coil domain containing 81provided by MGI
    Primary source
    MGI:MGI:1918134
    See related
    Ensembl:ENSMUSG00000039391 AllianceGenome:MGI:1918134
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4921513D09Rik
    Summary
    Predicted to be located in centrosome. Predicted to be active in microtubule organizing center. Is expressed in lung. Orthologous to human CCDC81 (coiled-coil domain containing 81). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 25.3) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ccdc81 in Genome Data Viewer
    Location:
    7 D3; 7 50.38 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (89515356..89552837, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (89866148..89903629, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53381 Neighboring gene malic enzyme 3, NADP(+)-dependent, mitochondrial Neighboring gene STARR-seq mESC enhancer starr_19494 Neighboring gene predicted gene 15744 Neighboring gene STARR-seq mESC enhancer starr_19496 Neighboring gene STARR-positive B cell enhancer ABC_E2241 Neighboring gene heat shock protein nuclear import factor Neighboring gene STARR-seq mESC enhancer starr_19498 Neighboring gene STARR-seq mESC enhancer starr_19499 Neighboring gene STARR-seq mESC enhancer starr_19500 Neighboring gene STARR-positive B cell enhancer ABC_E4947 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:97129229-97129338 Neighboring gene Eed upstream regulatory region Neighboring gene embryonic ectoderm development

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in centrosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in microtubule organizing center IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 81

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162979.1NP_001156451.1  coiled-coil domain-containing protein 81

      See identical proteins and their annotated locations for NP_001156451.1

      Status: VALIDATED

      Source sequence(s)
      AC165077, AK014876, AV255663
      Consensus CDS
      CCDS52306.1
      UniProtKB/Swiss-Prot
      A1L0U4, Q9D5W4
      UniProtKB/TrEMBL
      A7MCT4
      Related
      ENSMUSP00000044087.6, ENSMUST00000041195.6
      Conserved Domains (1) summary
      pfam14908
      Location:29158
      DUF4496; Domain of unknown function (DUF4496)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      89515356..89552837 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)