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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001199151.2 → NP_001186080.1 synphilin-1 isoform 1
See identical proteins and their annotated locations for NP_001186080.1
Status: VALIDATED
- Source sequence(s)
-
AC121943, AC124178
- Consensus CDS
-
CCDS57124.1
- UniProtKB/TrEMBL
- G5E848, Q3TVI3, Q4KMM4
- Related
- ENSMUSP00000137367.2, ENSMUST00000178678.8
- Conserved Domains (4) summary
-
- PHA02874
Location:421 → 509
- PHA02874; ankyrin repeat protein; Provisional
- sd00045
Location:348 → 381
- ANK; ANK repeat [structural motif]
- pfam16700
Location:511 → 554
- SNCAIP_SNCA_bd; Synphilin-1 alpha-Synuclein-binding domain
- pfam12796
Location:353 → 486
- Ank_2; Ankyrin repeats (3 copies)
-
NM_001199153.2 → NP_001186082.1 synphilin-1 isoform 1
See identical proteins and their annotated locations for NP_001186082.1
Status: VALIDATED
- Source sequence(s)
-
AC121943, AC124178
- Consensus CDS
-
CCDS57124.1
- UniProtKB/TrEMBL
- G5E848, Q3TVI3, Q4KMM4
- Related
- ENSMUSP00000025413.7, ENSMUST00000025413.14
- Conserved Domains (4) summary
-
- PHA02874
Location:421 → 509
- PHA02874; ankyrin repeat protein; Provisional
- sd00045
Location:348 → 381
- ANK; ANK repeat [structural motif]
- pfam16700
Location:511 → 554
- SNCAIP_SNCA_bd; Synphilin-1 alpha-Synuclein-binding domain
- pfam12796
Location:353 → 486
- Ank_2; Ankyrin repeats (3 copies)
-
NM_001199154.2 → NP_001186083.1 synphilin-1 isoform 2
See identical proteins and their annotated locations for NP_001186083.1
Status: VALIDATED
- Source sequence(s)
-
AC121943, AC124178
- Consensus CDS
-
CCDS37820.2
- UniProtKB/TrEMBL
- E9Q4E2, Q3V1N2
- Related
- ENSMUSP00000137549.2, ENSMUST00000178011.8
- Conserved Domains (5) summary
-
- cd00204
Location:344 → 509
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- pfam12796
Location:390 → 486
- Ank_2; Ankyrin repeats (3 copies)
- pfam13637
Location:349 → 404
- Ank_4; Ankyrin repeats (many copies)
- pfam16700
Location:511 → 554
- SNCAIP_SNCA_bd; Synphilin-1 alpha-Synuclein-binding domain
- sd00045
Location:348 → 381
- ANK; ANK repeat [structural motif]
-
NM_001403646.1 → NP_001390575.1 synphilin-1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC121943, AC124178
- UniProtKB/TrEMBL
-
J3QNK1
- Related
- ENSMUSP00000136838.2, ENSMUST00000179625.8
-
NM_001403647.1 → NP_001390576.1 synphilin-1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC121943, AC124178
- UniProtKB/TrEMBL
- G5E848, Q3TVI3, Q4KMM4
-
NM_001403648.1 → NP_001390577.1 synphilin-1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC121943, AC124178
- UniProtKB/TrEMBL
- G5E848, Q3TVI3, Q4KMM4
-
NM_026408.5 → NP_080684.3 synphilin-1 isoform 2
See identical proteins and their annotated locations for NP_080684.3
Status: VALIDATED
- Source sequence(s)
-
AC121943, AC124178
- Consensus CDS
-
CCDS37820.2
- UniProtKB/TrEMBL
- E9Q4E2, Q3V1N2
- Related
- ENSMUSP00000127189.3, ENSMUST00000163742.9
- Conserved Domains (5) summary
-
- cd00204
Location:344 → 509
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- pfam12796
Location:390 → 486
- Ank_2; Ankyrin repeats (3 copies)
- pfam13637
Location:349 → 404
- Ank_4; Ankyrin repeats (many copies)
- pfam16700
Location:511 → 554
- SNCAIP_SNCA_bd; Synphilin-1 alpha-Synuclein-binding domain
- sd00045
Location:348 → 381
- ANK; ANK repeat [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000084.7 Reference GRCm39 C57BL/6J
- Range
-
52900872..53049007
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017317971.2 → XP_017173460.1 synphilin-1 isoform X2
- UniProtKB/TrEMBL
-
J3QNK1
- Conserved Domains (3) summary
-
- sd00045
Location:361 → 393
- ANK; ANK repeat [structural motif]
- pfam16700
Location:451 → 494
- SNCAIP_SNCA_bd; Synphilin-1 alpha-Synuclein-binding domain
- pfam12796
Location:334 → 426
- Ank_2; Ankyrin repeats (3 copies)