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    C12orf42-AS1 C12orf42 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101929058, updated on 10-Dec-2024

    Summary

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    Official Symbol
    C12orf42-AS1provided by HGNC
    Official Full Name
    C12orf42 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:56185
    See related
    Ensembl:ENSG00000257860 AllianceGenome:HGNC:56185
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.3) See more
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    Genomic context

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    See C12orf42-AS1 in Genome Data Viewer
    Location:
    12q23.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (103151842..103168309)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (103112608..103129101)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (103545620..103562087)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene phenylalanine hydroxylase Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:103351919-103352450 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:103352451-103352982 Neighboring gene VISTA enhancer hs1574 Neighboring gene VISTA enhancer hs1114 Neighboring gene VISTA enhancers hs998, hs1354 and hs1540 Neighboring gene achaete-scute family bHLH transcription factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4776 Neighboring gene chromosome 12 open reading frame 42 Neighboring gene VISTA enhancer hs967 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6886 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6887 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4777 Neighboring gene U7 small nuclear RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6888 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6889 Neighboring gene VISTA enhancer hs1575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6890 Neighboring gene VISTA enhancer hs1723 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:103615579-103616560 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:103621893-103622473 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:103730647-103730806 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_23171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6891 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:103828343-103829043 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6892 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4779 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4780 Neighboring gene uncharacterized LOC105369945 Neighboring gene glutaryl-CoA dehydrogenase, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126333.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC068643, AI143882, AI242068, BX117711
      Related
      ENST00000547418.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      103151842..103168309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      103112608..103129101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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