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    Trav12-2 T cell receptor alpha variable 12-2 [ Mus musculus (house mouse) ]

    Gene ID: 100043322, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Trav12-2provided by MGI
    Official Full Name
    T cell receptor alpha variable 12-2provided by MGI
    Primary source
    MGI:MGI:5293447
    See related
    Ensembl:ENSMUSG00000096656 IMGT/GENE-DB:TRAV12-2; AllianceGenome:MGI:5293447
    Gene type
    other
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human TRAV18 (T cell receptor alpha variable 18). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Trav12-2 in Genome Data Viewer
    Location:
    14 C2; 14 27.44 cM
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (53853854..53854371)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (53616397..53616914)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene T cell receptor alpha chain Neighboring gene T cell receptor alpha variable 4-3 Neighboring gene T cell receptor alpha variable 12-3 Neighboring gene T cell receptor alpha variable 13-2 Neighboring gene T cell receptor alpha variable 5-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of transcripts from unrearranged V alpha 8 genes in the thymus. Holman PO, et al. J Immunol, 1993 Aug 15. PMID 8393896
    2. T cell receptor variable gene usage in a specific cytotoxic T cell response. Primary structure of the antigen-MHC receptor of four hapten-specific cytotoxic T cell clones. Iwamoto A, et al. J Exp Med, 1987 Mar 1. PMID 3493320, Free PMC Article
    3. Restricted alpha/beta receptor gene usage of idiotype-specific major histocompatibility complex-restricted T cells: selection for CDR3-related sequences. Snodgrass HR, et al. Eur J Immunol, 1992 Aug. PMID 1379189
    4. The structure of V alpha and J alpha segments in the mouse. Yague J, et al. Nucleic Acids Res, 1988 Dec 9. PMID 2849763, Free PMC Article
    5. Germline genomic structure of the B10.A mouse Tcra-V2 gene subfamily. Gahéry-Ségard H, et al. Immunogenetics, 1996. PMID 8753861

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • T-cell receptor alpha chain V region 12-2

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007044.1 

      Range
      1188931..1189448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      53853854..53854371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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