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    Fhip1a FHF complex subunit HOOK interacting protein 1A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365834, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fhip1aprovided by RGD
    Official Full Name
    FHF complex subunit HOOK interacting protein 1Aprovided by RGD
    Primary source
    RGD:1565007
    See related
    EnsemblRapid:ENSRNOG00000048256 AllianceGenome:RGD:1565007
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam160a1; RGD1565007
    Summary
    Predicted to be involved in protein localization to perinuclear region of cytoplasm. Orthologous to human FHIP1A (FHF complex subunit HOOK interacting protein 1A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 107.7), Kidney (RPKM 62.4) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fhip1a in Genome Data Viewer
    Location:
    2q34
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (173319252..173489514, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (171016951..171265715, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (184684851..184993350, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350049 Neighboring gene uncharacterized LOC134485633 Neighboring gene glutamyl-tRNA amidotransferase subunit B Neighboring gene uncharacterized LOC134485632 Neighboring gene ALG13, UDP-N-acetylglucosaminyltransferase subunit like, pseudogene 1 Neighboring gene 60S ribosomal protein L7a-like Neighboring gene cleavage and polyadenylation specific factor 3, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in protein localization to perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    FHF complex subunit HOOK-interacting protein 1A
    Names
    family with sequence similarity 160, member A1
    protein FAM160A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134592.1 → NP_001128064.1  FHF complex subunit HOOK-interacting protein 1A

      See identical proteins and their annotated locations for NP_001128064.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473976
      UniProtKB/TrEMBL
      A6J5Y6, A6J5Y7, M0R5L5
      Related
      ENSRNOP00000064685.3, ENSRNOT00000071580.4
      Conserved Domains (2) summary
      PHA02664
      Location:458 → 583
      PHA02664; hypothetical protein; Provisional
      pfam10257
      Location:1 → 212
      RAI16-like; Retinoic acid induced 16-like protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      173319252..173489514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102756.2 → XP_038958684.1  FHF complex subunit HOOK-interacting protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A8I6GM32
      Conserved Domains (2) summary
      pfam10257
      Location:88 → 411
      RAI16-like; Retinoic acid induced 16-like protein
      NF033845
      Location:660 → 766
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

    2. XM_039102754.2 → XP_038958682.1  FHF complex subunit HOOK-interacting protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A8I6GM32
      Related
      ENSRNOP00000097488.2, ENSRNOT00000103378.2
      Conserved Domains (2) summary
      pfam10257
      Location:88 → 411
      RAI16-like; Retinoic acid induced 16-like protein
      NF033845
      Location:660 → 766
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
    Nucleotide Protein Strain
    Heading Accession and Version

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