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    Rbm25l1 RNA binding motif protein 25-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 497865, updated on 9-Dec-2024

    Summary

    Symbol
    Rbm25l1provided by RGD
    Full Name
    RNA binding motif protein 25-like 1provided by RGD
    Primary source
    RGD:1565486
    See related
    AllianceGenome:RGD:1565486
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565486
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Orthologous to human RBM25 (RNA binding motif protein 25). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See Rbm25l1 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (10773494..10776509)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (10267026..10270510)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (10457316..10460540)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene RNA binding fox-1 homolog 1 Neighboring gene ribosomal protein L11, pseudogene 1 Neighboring gene uncharacterized LOC134480751 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene uncharacterized LOC108352213

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of alternative mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      10773494..10776509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003750770.5XP_003750818.2  RNA-binding protein 25

      UniProtKB/TrEMBL
      A0A8I5ZWC8, F1LT30
      Conserved Domains (2) summary
      smart00311
      Location:736809
      PWI; domain in splicing factors
      cd12446
      Location:87169
      RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins