Lipm lipase, family member M [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Lipmprovided by RGD
Official Full Name: lipase, family member Mprovided by RGD
Primary source: RGD:1304912
See related: EnsemblRapid:ENSRNOG00000019301 AllianceGenome:RGD:1304912
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Lipl3
Summary: Predicted to enable hydrolase activity, acting on ester bonds. Predicted to be involved in lipid catabolic process. Orthologous to human LIPM (lipase family member M). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Lung (RPKM 10.0), Uterus (RPKM 4.5) and 3 other tissues See more
Orthologs: human all
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Genomic context

Location:: 1q52

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (241031382..241050796)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (231618145..231637599)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (252409232..252428567)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables hydrolase activity, acting on ester bonds	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in lipid catabolic process	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: lipase member M

Names: lipase-like, ab-hydrolase domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001432293.1 → NP_001419222.1 lipase member M precursor

Status: VALIDATED

Source sequence(s)

JAXUCZ010000001

UniProtKB/TrEMBL

D4AA61

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

241031382..241050796

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_220066.9 → XP_220066.4 lipase member M

Related

ENSRNOP00000026219.3, ENSRNOT00000026219.7

Conserved Domains (3) summary

pfam00561
Location:92 → 392

Abhydrolase_1; alpha/beta hydrolase fold

pfam04083
Location:49 → 111

Abhydro_lipase; Partial alpha/beta-hydrolase lipase region

pfam12695
Location:93 → 231

Abhydrolase_5; Alpha/beta hydrolase family