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    ran-5 RanBD1 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 174011, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ran-5
    Official Full Name
    RanBD1 domain-containing protein
    Primary source
    WormBase:WBGene00004306
    Locus tag
    CELE_R12C12.2
    See related
    AllianceGenome:WB:WBGene00004306
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to contribute to GTPase activator activity. Predicted to be involved in intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to human RANBP3 (RAN binding protein 3). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ran-5 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    7
    Sequence:
    Chromosome: II; NC_003280.10 (6048109..6049686)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene TMEM9 protein;Transmembrane protein 9 Neighboring gene ncRNA Neighboring gene Glycine cleavage system P protein Neighboring gene Zf-AD domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Wnt signaling drives WRM-1/beta-catenin asymmetries in early C. elegans embryos. Nakamura K, et al. Genes Dev, 2005 Aug 1. PMID 16077004, Free PMC Article
    2. Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. Ceron J, et al. BMC Dev Biol, 2007 Apr 6. PMID 17417969, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RanBD1 domain-containing protein
    NP_495208.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      6048109..6049686
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062807.9 → NP_495208.1  RanBD1 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495208.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21961
      Conserved Domains (1) summary
      smart00160
      Location:134 → 265
      RanBD; Ran-binding domain
    Nucleotide Protein
    Heading Accession and Version

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