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    chil-10 Chitinase domain-containing protein 1 [ Caenorhabditis elegans ]

    Gene ID: 180447, updated on 9-Dec-2024

    Summary

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    Official Symbol
    chil-10
    Official Full Name
    Chitinase domain-containing protein 1
    Primary source
    WormBase:WBGene00016642
    Locus tag
    CELE_C44C1.2
    See related
    AllianceGenome:WB:WBGene00016642
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable oligosaccharide binding activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be active in endomembrane system. Is expressed in head; intestine; and rectal gland cell. Orthologous to human CHID1 (chitinase domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See chil-10 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    7
    Sequence:
    Chromosome: X; NC_003284.9 (957881..960568)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Beta-arrestin arr-1 Neighboring gene AP-3 complex subunit mu Neighboring gene Neuronal calcium sensor 1 Neighboring gene Neuropeptide-Like Protein Neighboring gene Vacuolar protein sorting-associated protein 45 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA polymerase II C-terminal domain phosphorylation patterns in Caenorhabditis elegans operons, polycistronic gene clusters with only one promoter. Garrido-Lecca A, et al. Mol Cell Biol, 2010 Aug. PMID 20498277, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables oligosaccharide binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Chitinase domain-containing protein 1
    NP_508185.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      957881..960568
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075784.8 → NP_508185.2  Chitinase domain-containing protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_508185.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18607
      Conserved Domains (1) summary
      cd02876
      Location:57 → 370
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
    Nucleotide Protein
    Heading Accession and Version

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