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    vet-2 Very Early Transcript [ Caenorhabditis elegans ]

    Gene ID: 172993, updated on 14-Nov-2024

    Summary

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    Official Symbol
    vet-2
    Official Full Name
    Very Early Transcript
    Primary source
    WormBase:WBGene00016453
    Locus tag
    CELE_C35E7.1
    See related
    AllianceGenome:WB:WBGene00016453
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in autophagy. Located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See vet-2 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    6
    Sequence:
    Chromosome: I; NC_003279.8 (10846772..10850103)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Reverse transcriptase domain-containing protein Neighboring gene Glutamic acid-rich protein-like Neighboring gene ncRNA Neighboring gene Saposin B-type domain-containing protein Neighboring gene Signal recognition particle-docking protein FtsY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SEPA-1 mediates the specific recognition and degradation of P granule components by autophagy in C. elegans. Zhang Y, et al. Cell, 2009 Jan 23. PMID 19167332
    2. Repression of gene expression in the embryonic germ lineage of C. elegans. Seydoux G, et al. Nature, 1996 Aug 22. PMID 8751441
    3. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
    4. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article
    5. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Very Early Transcript
    NP_001251515.2
    • Product from WormBase gene class vet;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      10846772..10850103
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001264586.7 → NP_001251515.2  Very Early Transcript [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001251515.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O61775
    Nucleotide Protein
    Heading Accession and Version

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