U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    F53B6.4 Major sperm protein [ Caenorhabditis elegans ]

    Gene ID: 172709, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    F53B6.4
    Official Full Name
    Major sperm protein
    Primary source
    WormBase:WBGene00009959
    Locus tag
    CELE_F53B6.4
    See related
    AllianceGenome:WB:WBGene00009959
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in cytoskeleton and membrane. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See F53B6.4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (8947304..8948711, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Fungus-Induced Protein Neighboring gene FIP (Fungus-Induced Protein) Related Neighboring gene O-fucosyltransferase family protein Neighboring gene Elf-1_N domain-containing protein Neighboring gene Peptidase_M24 domain-containing protein Neighboring gene tRNA-Lys Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Roles for the RNA polymerase III regulator MAFR-1 in regulating sperm quality in Caenorhabditis elegans. Hammerquist AM, et al. Sci Rep, 2020 Nov 9. PMID 33168938, Free PMC Article
    2. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Major sperm protein
    NP_001250938.1
    • Partially confirmed by transcript evidence
    NP_001380117.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      8947304..8948711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001264009.2 → NP_001250938.1  Major sperm protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001250938.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XVN1
      Conserved Domains (1) summary
      pfam00635
      Location:236 → 333
      Motile_Sperm; MSP (Major sperm protein) domain

    2. NM_001392737.1 → NP_001380117.1  Major sperm protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      I2HA90
      Conserved Domains (1) summary
      pfam00635
      Location:194 → 291
      Motile_Sperm; MSP (Major sperm protein) domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools