U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    xtr-1 MX region of TRA-2 Related [ Caenorhabditis elegans ]

    Gene ID: 192057, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    xtr-1
    Official Full Name
    MX region of TRA-2 Related
    Primary source
    WormBase:WBGene00006965
    Locus tag
    CELE_F54F7.4
    See related
    AllianceGenome:WB:WBGene00006965
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See xtr-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    2
    Sequence:
    Chromosome: X; NC_003284.9 (11852794..11853729)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene DUF19 domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Ovule protein Neighboring gene Protein mes-1 Neighboring gene Elongin-C

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Germ-line regulation of the Caenorhabditis elegans sex-determining gene tra-2. Kuwabara PE, et al. Dev Biol, 1998 Dec 1. PMID 9851857
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables transmembrane signaling receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in germ-line sex determination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in hermaphrodite germ-line sex determination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in hermaphrodite somatic sex determination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    MX region of TRA-2 Related
    NP_001309443.1
    • Product from WormBase gene class xtr;
      Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      11852794..11853729
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001322634.2 → NP_001309443.1  MX region of TRA-2 Related [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20791
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools