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    rps-5 Small ribosomal subunit protein uS7 [ Caenorhabditis elegans ]

    Gene ID: 178012, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rps-5
    Official Full Name
    Small ribosomal subunit protein uS7
    Primary source
    WormBase:WBGene00004474
    Locus tag
    CELE_T05E11.1
    See related
    AllianceGenome:WB:WBGene00004474
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable mRNA binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly and translation. Predicted to be located in cytoplasm and nucleolus. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Predicted to be active in ribosome. Orthologous to human RPS5 (ribosomal protein S5). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rps-5 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (11110157..11111045, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Putative GPI-anchor transamidase Neighboring gene ncRNA Neighboring gene CLaudin-like in Caenorhabditis Neighboring gene Intramembrane protease 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Caenorhabditis elegans mediator complexes are required for developmental-specific transcriptional activation. Kwon JY, et al. Proc Natl Acad Sci U S A, 1999 Dec 21. PMID 10611325, Free PMC Article
    2. CDK-9/cyclin T (P-TEFb) is required in two postinitiation pathways for transcription in the C. elegans embryo. Shim EY, et al. Genes Dev, 2002 Aug 15. PMID 12183367, Free PMC Article
    3. A broad but restricted requirement for TAF-5 (human TAFII100) for embryonic transcription in Caenorhabditis elegans. Walker AK, et al. J Biol Chem, 2003 Feb 21. PMID 12458202
    4. The RING finger/B-box factor TAM-1 and a retinoblastoma-like protein LIN-35 modulate context-dependent gene silencing in Caenorhabditis elegans. Hsieh J, et al. Genes Dev, 1999 Nov 15. PMID 10580003, Free PMC Article
    5. Nucleolar proteins suppress Caenorhabditis elegans innate immunity by inhibiting p53/CEP-1. Fuhrman LE, et al. PLoS Genet, 2009 Sep. PMID 19763173, Free PMC Article

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ribosomal small subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ribosomal small subunit biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small-subunit processome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Small ribosomal subunit protein uS7
    NP_502077.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      11110157..11111045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069676.6 → NP_502077.1  Small ribosomal subunit protein uS7 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502077.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P49041
      Conserved Domains (1) summary
      cd14867
      Location:25 → 210
      uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P49041.1

    Gene LinkOut

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