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    perm-4 PERMeable eggshell [ Caenorhabditis elegans ]

    Gene ID: 176932, updated on 9-Dec-2024

    Summary

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    Official Symbol
    perm-4
    Official Full Name
    PERMeable eggshell
    Primary source
    WormBase:WBGene00016638
    Locus tag
    CELE_C44B12.5
    See related
    AllianceGenome:WB:WBGene00016638
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in oocyte. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See perm-4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (1121494..1125107, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene 7TM GPCR serpentine receptor class x (Srx) domain-containing protein Neighboring gene ncRNA Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Secreted protein Neighboring gene AAI domain-containing protein;Clip domain-containing protein;Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CBD-1 organizes two independent complexes required for eggshell vitelline layer formation and egg activation in C. elegans. González DP, et al. Dev Biol, 2018 Oct 15. PMID 30120927, Free PMC Article
    2. Integration of behavioural tests and transcriptome sequencing of C. elegans reveals how the nematode responds to peanut shell biochar amendment. Li J, et al. Sci Total Environ, 2020 Mar 10. PMID 31972909
    3. Genome-wide microarrray analysis reveals roles for the REF-1 family member HLH-29 in ferritin synthesis and peroxide stress response. Quach TK, et al. PLoS One, 2013. PMID 23533643, Free PMC Article
    4. Yolk-deprived Caenorhabditis elegans secure brood size at the expense of competitive fitness. Geens E, et al. Life Sci Alliance, 2023 Jun. PMID 37059473, Free PMC Article
    5. Galectin LEC-1 plays a defensive role against damage due to oxidative stress in Caenorhabditis elegans. Takeuchi T, et al. J Biochem, 2013 Nov. PMID 23935187

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    PERMeable eggshell
    NP_500041.2
    • Product from WormBase gene class perm;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      1121494..1125107 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067640.10 → NP_500041.2  PERMeable eggshell [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500041.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O44144
      Conserved Domains (1) summary
      PRK14959
      Location:214 → 311
      PRK14959; DNA polymerase III subunits gamma and tau; Provisional
    Nucleotide Protein
    Heading Accession and Version

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