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    Y55D9A.2 G-patch domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178216, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y55D9A.2
    Official Full Name
    G-patch domain-containing protein
    Primary source
    WormBase:WBGene00013224
    Locus tag
    CELE_Y55D9A.2
    See related
    AllianceGenome:WB:WBGene00013224
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable nucleic acid binding activity. Is expressed in intestine and nervous system. Orthologous to human AGGF1 (angiogenic factor with G-patch and FHA domains 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y55D9A.2 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    8
    Sequence:
    Chromosome: IV; NC_003282.8 (12601126..12605431, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Multidrug resistance protein pgp-1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Lys Neighboring gene Exchange factor for Arf-6 Neighboring gene Ack-related non-receptor tyrosine kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    G-patch domain-containing protein
    NP_502414.1
    • Confirmed by transcript evidence
    NP_502415.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      12601126..12605431 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070013.7 → NP_502414.1  G-patch domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502414.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U244, Q9XWG6
      Conserved Domains (2) summary
      smart00443
      Location:431 → 477
      G_patch; glycine rich nucleic binding domain
      cd16074
      Location:17 → 70
      OCRE; OCRE domain

    2. NM_070014.7 → NP_502415.1  G-patch domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502415.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95Q15
      Conserved Domains (2) summary
      smart00443
      Location:431 → 477
      G_patch; glycine rich nucleic binding domain
      cd16074
      Location:17 → 70
      OCRE; OCRE domain
    Nucleotide Protein
    Heading Accession and Version

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