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    F23B12.4 Reelin domain-containing protein;ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179944, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F23B12.4
    Official Full Name
    Reelin domain-containing protein;ShKT domain-containing protein
    Primary source
    WormBase:WBGene00009081
    Locus tag
    CELE_F23B12.4
    See related
    AllianceGenome:WB:WBGene00009081
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F23B12.4 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    10
    Sequence:
    Chromosome: V; NC_003283.11 (14441141..14445349)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Programmed cell death activator egl-1 Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial Neighboring gene Protein farnesyltransferase subunit beta Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. β-Integrin de-phosphorylation by the Density-Enhanced Phosphatase DEP-1 attenuates EGFR signaling in C. elegans. Walser M, et al. PLoS Genet, 2017 Jan. PMID 28135265, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Reelin domain-containing protein;ShKT domain-containing protein
    NP_001122926.2
    • Confirmed by transcript evidence
    NP_001122927.1
    • Confirmed by transcript evidence
    NP_001359754.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      14441141..14445349
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001373159.4 → NP_001359754.1  Reelin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1B6T5
      Conserved Domains (1) summary
      cd08544
      Location:40 → 169
      Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins

    2. NM_001129454.3 → NP_001122926.2  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122926.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8WHS3
      Conserved Domains (2) summary
      cd08544
      Location:40 → 169
      Reeler; Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins
      pfam01549
      Location:330 → 367
      ShK; ShK domain-like

    3. NM_001129455.3 → NP_001122927.1  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122927.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19751
      Conserved Domains (1) summary
      pfam01549
      Location:97 → 134
      ShK; ShK domain-like
    Nucleotide Protein
    Heading Accession and Version

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