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    zfp-3 C3H1-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180479, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zfp-3
    Official Full Name
    C3H1-type domain-containing protein
    Primary source
    WormBase:WBGene00021047
    Locus tag
    CELE_W05H7.4
    See related
    AllianceGenome:WB:WBGene00021047
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. Located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See zfp-3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    9
    Sequence:
    Chromosome: X; NC_003284.9 (1440360..1446643, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene putative trafficking protein particle complex subunit 2 Neighboring gene Uncharacterized protein Neighboring gene CCAAT/enhancer-binding protein homolog 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Casein Kinase 1δ Stabilizes Mature Axons by Inhibiting Transcription Termination of Ankyrin. LaBella ML, et al. Dev Cell, 2020 Jan 6. PMID 31910362, Free PMC Article
    2. Genes involved in pre-mRNA 3'-end formation and transcription termination revealed by a lin-15 operon Muv suppressor screen. Cui M, et al. Proc Natl Acad Sci U S A, 2008 Oct 28. PMID 18946043, Free PMC Article
    3. Functional genomic analysis of RNA interference in C. elegans. Kim JK, et al. Science, 2005 May 20. PMID 15790806
    4. Shifted Transversal Design smart-pooling for high coverage interactome mapping. Xin X, et al. Genome Res, 2009 Jul. PMID 19447967, Free PMC Article
    5. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    C3H1-type domain-containing protein
    NP_001024942.1
    • Partially confirmed by transcript evidence
    NP_001367703.1
    • Confirmed by transcript evidence
    NP_001370614.1
    • Partially confirmed by transcript evidence
    NP_741719.2
    • Confirmed by transcript evidence
    NP_741720.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      1440360..1446643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_171627.9 → NP_741719.2  C3H1-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741719.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZI3
      Conserved Domains (1) summary
      smart00356
      Location:470 → 495
      ZnF_C3H1; zinc finger

    2. NM_171628.3 → NP_741720.2  C3H1-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741720.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O02174
      Conserved Domains (1) summary
      pfam00642
      Location:413 → 436
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    3. NM_001029771.6 → NP_001024942.1  C3H1-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024942.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZI6
      Conserved Domains (1) summary
      smart00356
      Location:473 → 498
      ZnF_C3H1; zinc finger

    4. NM_001383527.1 → NP_001370614.1  C3H1-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZI4

    5. NM_001380907.1 → NP_001367703.1  C3H1-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZI5
    Nucleotide Protein
    Heading Accession and Version

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