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    F57G12.2 C2H2-type domain-containing protein;Spt4 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 186478, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F57G12.2
    Official Full Name
    C2H2-type domain-containing protein;Spt4 domain-containing protein
    Primary source
    WormBase:WBGene00010222
    Locus tag
    CELE_F57G12.2
    See related
    AllianceGenome:WB:WBGene00010222
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F57G12.2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    8
    Sequence:
    Chromosome: X; NC_003284.9 (12156307..12160052, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene pyrroline-5-carboxylate reductase Neighboring gene C2HC/C3H-type domain-containing protein Neighboring gene UNC93-like protein MFSD11 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    C2H2-type domain-containing protein;Spt4 domain-containing protein
    NP_001257185.1
    • Confirmed by transcript evidence
    NP_001257186.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      12156307..12160052 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270256.3 → NP_001257185.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257185.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EEW2

    2. NM_001270257.2 → NP_001257186.1  Spt4 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257186.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20956
    Nucleotide Protein
    Heading Accession and Version

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