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    phf-31 Zinc finger PHD-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 184417, updated on 9-Dec-2024

    Summary

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    Official Symbol
    phf-31
    Official Full Name
    Zinc finger PHD-type domain-containing protein
    Primary source
    WormBase:WBGene00008747
    Locus tag
    CELE_F13E6.3
    See related
    AllianceGenome:WB:WBGene00008747
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See phf-31 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    5
    Sequence:
    Chromosome: X; NC_003284.9 (10681998..10682970)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Adenylate kinase isoenzyme 5 Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Yes-associated protein homolog 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Zinc finger PHD-type domain-containing protein
    NP_001360413.1
    • Confirmed by transcript evidence
    NP_001368595.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      10681998..10682970
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001373487.2 → NP_001360413.1  Zinc finger PHD-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A131MDG3
      Conserved Domains (1) summary
      smart00249
      Location:122 → 164
      PHD; PHD zinc finger

    2. NM_001381090.1 → NP_001368595.1  Zinc finger PHD-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A131MBT4
      Conserved Domains (1) summary
      smart00249
      Location:113 → 155
      PHD; PHD zinc finger
    Nucleotide Protein
    Heading Accession and Version

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