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    nra-3 AT rich interactive domain 1A (SWI-like);PHD-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181206, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nra-3
    Official Full Name
    AT rich interactive domain 1A (SWI-like);PHD-type domain-containing protein
    Primary source
    WormBase:WBGene00007651
    Locus tag
    CELE_C17G1.4
    See related
    AllianceGenome:WB:WBGene00007651
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See nra-3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    9
    Sequence:
    Chromosome: X; NC_003284.9 (9925728..9931462, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene UDP-glucuronosyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The TORC1 phosphoproteome in C. elegans reveals roles in transcription and autophagy. Sewell AK, et al. iScience, 2022 May 20. PMID 35479415, Free PMC Article
    2. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article
    3. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AT rich interactive domain 1A (SWI-like);PHD-type domain-containing protein
    NP_001359582.1
    • Confirmed by transcript evidence
    NP_001359683.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      9925728..9931462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001373452.1 → NP_001359582.1  PHD-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93238
      Conserved Domains (4) summary
      PTZ00449
      Location:454 → 753
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd15489
      Location:901 → 954
      PHD_SF; PHD finger superfamily
      pfam06682
      Location:275 → 414
      SARAF; SOCE-associated regulatory factor of calcium homoeostasis
      pfam09770
      Location:103 → 224
      PAT1; Topoisomerase II-associated protein PAT1

    2. NM_001373453.3 → NP_001359683.1  AT rich interactive domain 1A (SWI-like) [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5WRN0
      Conserved Domains (3) summary
      PTZ00449
      Location:454 → 753
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam06682
      Location:275 → 414
      SARAF; SOCE-associated regulatory factor of calcium homoeostasis
      pfam09770
      Location:103 → 224
      PAT1; Topoisomerase II-associated protein PAT1
    Nucleotide Protein
    Heading Accession and Version

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