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    F56H6.1 N-acetylgalactosaminide beta-1,3-galactosyltransferase [ Caenorhabditis elegans ]

    Gene ID: 186412, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F56H6.1
    Official Full Name
    N-acetylgalactosaminide beta-1,3-galactosyltransferase
    Primary source
    WormBase:WBGene00010162
    Locus tag
    CELE_F56H6.1
    See related
    AllianceGenome:WB:WBGene00010162
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F56H6.1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (12281221..12282615)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase domain-containing protein Neighboring gene pseudo Neighboring gene Carbohydrate sulfotransferase Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    N-acetylgalactosaminide beta-1,3-galactosyltransferase
    NP_493101.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      12281221..12282615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_060700.1 → NP_493101.1  N-acetylgalactosaminide beta-1,3-galactosyltransferase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493101.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O45579
      Conserved Domains (1) summary
      cl21608
      Location:127 → 254
      Galactosyl_T; Galactosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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