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    dpy-13 Cuticle collagen dpy-13 [ Caenorhabditis elegans ]

    Gene ID: 177187, updated on 9-Dec-2024

    Summary

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    Official Symbol
    dpy-13
    Official Full Name
    Cuticle collagen dpy-13
    Primary source
    WormBase:WBGene00001074
    Locus tag
    CELE_F30B5.1
    See related
    AllianceGenome:WB:WBGene00001074
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in collagen and cuticulin-based cuticle extracellular matrix. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See dpy-13 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (4235614..4236710)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class BC (Class B-like) Neighboring gene Zinc transporter ZIP3 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mutant Caenorhabditis elegans RNA polymerase II with a 20,000-fold reduced sensitivity to alpha-amanitin. Rogalski TM, et al. Genetics, 1990 Dec. PMID 2076819, Free PMC Article
    2. Transformation of Caenorhabditis elegans with genes from parasitic nematodes. Grant WN. Parasitol Today, 1992 Oct. PMID 15463533
    3. RNA polymerase II from wild type and alpha-amanitin-resistant strains of Caenorhabditis elegans. Sanford T, et al. J Biol Chem, 1983 Nov 10. PMID 6630208
    4. Targeted gene deletions in C. elegans using transposon excision. Frøkjaer-Jensen C, et al. Nat Methods, 2010 Jun. PMID 20418868, Free PMC Article
    5. Cuticle collagen genes of Haemonchus contortus and Caenorhabditis elegans are highly conserved. Shamansky LM, et al. Mol Biochem Parasitol, 1989 Nov. PMID 2615789

    See all (72) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cuticle development involved in collagen and cuticulin-based cuticle molting cycle IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen and cuticulin-based cuticle extracellular matrix IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cuticle collagen dpy-13
    NP_500519.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      4235614..4236710
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068118.6 → NP_500519.1  Cuticle collagen dpy-13 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500519.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P17657
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P17657.2

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