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    iglr-3 Ig-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171771, updated on 9-Dec-2024

    Summary

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    Official Symbol
    iglr-3
    Official Full Name
    Ig-like domain-containing protein
    Primary source
    WormBase:WBGene00021353
    Locus tag
    CELE_Y37E3.13
    See related
    AllianceGenome:WB:WBGene00021353
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in membrane. Orthologous to human LRRC24 (leucine rich repeat containing 24). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See iglr-3 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    8
    Sequence:
    Chromosome: I; NC_003279.8 (2085605..2093796, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene IstB_IS21 domain-containing protein;Secreted protein;ethanolamine-phosphate cytidylyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Nuclear pore protein Neighboring gene Uncharacterized protein Neighboring gene Solute carrier family 40 member

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Ig-like domain-containing protein
    NP_001293349.1
    • Confirmed by transcript evidence
    NP_001293350.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      2085605..2093796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001306420.2 → NP_001293349.1  Ig-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293349.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X5LX93
      Conserved Domains (4) summary
      COG4886
      Location:47 → 196
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:51 → 73
      LRR_RI; leucine-rich repeat [structural motif]
      cd00096
      Location:260 → 263
      Ig; Ig strand B [structural motif]
      pfam13927
      Location:243 → 319
      Ig_3; Immunoglobulin domain

    2. NM_001306421.3 → NP_001293350.1  Ig-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293350.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X5M5V2
      Conserved Domains (4) summary
      sd00031
      Location:7 → 28
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:6 → 61
      LRR_8; Leucine rich repeat
      cd00096
      Location:125 → 128
      Ig; Ig strand B [structural motif]
      pfam13927
      Location:108 → 184
      Ig_3; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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