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    nhr-178 Nuclear Hormone Receptor family [ Caenorhabditis elegans ]

    Gene ID: 184560, updated on 9-Dec-2024

    Summary

    Official Symbol
    nhr-178
    Official Full Name
    Nuclear Hormone Receptor family
    Primary source
    WormBase:WBGene00017510
    Locus tag
    CELE_F16B4.9
    See related
    AllianceGenome:WB:WBGene00017510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in several structures, including coelomocyte; intestine; neurons; pharynx; and spermatheca. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See nhr-178 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    9
    Sequence:
    Chromosome: V; NC_003283.11 (1603906..1607953, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene F-box domain-containing protein Neighboring gene ncRNA Neighboring gene NR LBD domain-containing protein Neighboring gene Serpentine Receptor, class BC (Class B-like)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Nuclear Hormone Receptor family
    NP_503454.2
    • Product from WormBase gene class nhr;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      1603906..1607953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071053.4NP_503454.2  Nuclear Hormone Receptor family [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_503454.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O44635
      Conserved Domains (2) summary
      smart00399
      Location:2395
      ZnF_C4; c4 zinc finger in nuclear hormone receptors
      pfam00104
      Location:193397
      Hormone_recep; Ligand-binding domain of nuclear hormone receptor