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    • Showing Current items.

    lron-15 Chaoptin [ Caenorhabditis elegans ]

    Gene ID: 174079, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lron-15
    Official Full Name
    Chaoptin
    Primary source
    WormBase:WBGene00016974
    Locus tag
    CELE_C56E6.6
    See related
    AllianceGenome:WB:WBGene00016974
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in cell development. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lron-15 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    17
    Sequence:
    Chromosome: II; NC_003280.10 (6540195..6544892, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ABC transporter family G domain-containing protein Neighboring gene ncRNA Neighboring gene DRIM domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in cell development IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Chaoptin
    NP_495322.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      6540195..6544892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062921.6 → NP_495322.3  Chaoptin [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495322.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18902
      Conserved Domains (5) summary
      cd00116
      Location:607 → 799
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:726 → 739
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:433 → 462
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:510 → 551
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:583 → 642
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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