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    F56D5.9 BRCT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 186386, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F56D5.9
    Official Full Name
    BRCT domain-containing protein
    Primary source
    WormBase:WBGene00010152
    Locus tag
    CELE_F56D5.9
    See related
    AllianceGenome:WB:WBGene00010152
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F56D5.9 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    9
    Sequence:
    Chromosome: IV; NC_003282.8 (9418432..9422508, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Dentin sialophosphoprotein-like;FK506-binding protein 5-like;Protein hokC Neighboring gene ncRNA Neighboring gene Coiled-coil domain-containing protein 69 Neighboring gene pseudo Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene Daxx;SPX domain-containing protein;Uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BRCT domain-containing protein
    NP_501662.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      9418432..9422508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069261.3 → NP_501662.2  BRCT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501662.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20878
      Conserved Domains (4) summary
      smart00292
      Location:938 → 996
      BRCT; breast cancer carboxy-terminal domain
      cd00204
      Location:791 → 859
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13637
      Location:792 → 843
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:793 → 820
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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